Summarise coverage by lineage/mutation combo

Useful for finding whether some calls were based on less information

Usage

coverage_by_lineage_defs(provoc_obj, fun = mean, ...)

Arguments

provoc_obj

Result of provoc().

fun

The function used to summarise the coverage information.

...

Further arguments passed onto fun(), such as prob = 0.5 to find the median when fun = quantile.

Value

A matrix with the total column and row names of all lineage defs, and entries indicating the number of analyses which used that mutation in that lineage.